Installation | Setup | Introduction | Structure reconstruction | Reconstruction of structures for one image | Reconstruction of structures for all images | Intersection with cells | Structure level metrics | Proportion of cell types within structures | Shape Metrics | Cell level metrics | Distance to structure border | Structure boundary vs FOV boundary | Session Info | References

Installation | Setup | Introduction | Reconstruction of pancreatic islets | Reconstruction of pancreatic islets for one image | Reconstruction of pancreatic islets for all images | Calculation of metrics | Structure metrics | Investigate metrics | Plot structure metrics | Testing using mixed effects models | Model diagnostics | Session Info | References